Similar posts • Search »

• Snpeff build error
  Hi, I am trying to do exome analysis among Solanum lycopersicum leaf curl mutants. I have follow...
• Using the S. cerevisiae (sacCer3) reference genome with snpEff
  Hello- I'm trying to using snpEff to analyze the effects of SNPs and Indels on yeast protein cod...
• Genome source from history in SnpEff
  Hello, I am using SnpEff in Galaxy to add variant information to my vcf file. Please let me ask 2...
• SnpEff custom genome data in Galaxy
  Hello, I'm trying to use Galaxy to run SnpEff eff with a custom database I prepared with SnpEff v...
• Error executing tool: maximum recursion depth exceeded while calling a Python object
  Hi, I'm using a custom genome (in FASTA format) which I downloaded from EupathDB.org. I used User...
• SnpEff Cryptosporidium hominis
  SnpEff - would it be possible for C. hominis to be added as a SNPEFF database - currently there a...
• usegalaxy build snpEff database via genbank
  Hello, I have built the SnpEff4.3 database for Salmo salar's chromosome 25 from Genbank and I hav...
• Bam To Bigwig
  Hello, I am trying to convert a BAM file to Bigwig using the Convert Format option under Attribu...
• Is it possible to upload SnpEff databases to Galaxy?
  I have created a database with SnpEff 4.0, which should be compatible with Galaxy. Is it possible...
• Liftover tool not working at UCSC
  Hello, I tried to convert hg18 coordinates in a BED format data with UCSC liftover and it is not...
• SNPeff for date palm
  Now I get the  .VCF  file  from  Samtools  and   i want  to  annotate  My SNPs. i have choose to ...
• Need help with "SnpEff" tool
  hi i am trying to use snpeff on galaxy...i give vcf file but i dnt know in genome portion what i ...
• SnpEff supports only genomes of two species?
  Under usegalaxy, I was trying to use SnpEff to annotate my VCF, but the genome dropdown list show...
• Database Of C_Briggsae_Ws230 For Snpeff
  Hi, Using SnpEff in the Galaxy main server, I need the Caenorhabditis briggsae genome as a refer...
• Problem With Gatk Tools Not Accepting Bam File As Input
  I am using GATK tools on the useGalaxy main server to detect variants in a mutant C. elegans whol...
• Extract Genomic Dna
  Hi all, Does anyone know if you can use the "Extract Genomic DNA" command with a genome not in...
• SNP tool (Amino acid change) throwing error
  Hi I have discovered some 240,000 SNPs and am using the **"amino-acid changes caused by a set of...