Question: SnpEff database build tool for C.elegans
gravatar for shilpah
4 months ago by
shilpah0 wrote:

I am trying to use the SnpEff build database tool to build reference genome for C.elegans and use it to annotate variants. I uploaded the genome from NCBI in both GFF and Fasta format. But the job gives a fatal error code 255. What does this error mean? Should I input genome from different source or format?

ADD COMMENTlink modified 4 months ago by Jennifer Hillman Jackson25k • written 4 months ago by shilpah0
gravatar for Jennifer Hillman Jackson
4 months ago by
United States
Jennifer Hillman Jackson25k wrote:


Skip these two preparation tools - they are known to be problematic right now.

Instead, use an annotated GenBank file as an input.

Related tickets with full details if interested (warning, are long/technical):

Thanks, Jen, Galaxy team

ADD COMMENTlink written 4 months ago by Jennifer Hillman Jackson25k
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