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• Bowtie2 not running
  Hello, I have 4 Bowtie2 analyses that I executed about 18 hours ago that are still grey and queue...
• Bowtie2 not working
  Hello, Since 29th January, NGS mapping tool Bowtie2 isn't functioning properly. With repeated occ...
• Bowtie2 not working
  Dear sir, i have uploaded some RNA Seq data and done with FastQc. I wanted to map the reads to m...
• Bowtie2/BWA-MEM remain waiting to run for several days in Main server. Is it only in my account?
  Hi all, I've been trying to run Bowtie2 and BWA-MEM with several datasets and in different histo...
• Download Bowtie2 alignment
  Hi, I have done a saturation mutagenesis experiment and sequenced the resulting PCR products via...
• Bowtie2 error on producing results
  Hi All, I'm trying to map a test Illumina sequences on cat genome.. I uploaded may Fasta sequence...
• Paired-end dataset collection with Bowtie2
  Hi, I made a paired-end fastqsanger dataset collection and tried to run it with Bowtie2, but it ...
• How to get only paired end or single end uniquely mapped reads with Bowtie2?
  Hello, I am using bowtie2 on galaxy to map ChIP-seq single end and paired end libraries to a ref...
• Need help with "Bowtie2" tool
  Hi, is there a way to upload our own reference genome?   Tool name: Bowtie2 Tool version: 0.2 ...
• GALAXY_SLOTS not working
  Hi All, I have the strong impression that the GALAXY_SLOTS directive is not working. Bowtie2 run...
• TOPHAT error: segment-based junction search failed with err =-6 what(): std::bad_alloc
  Anyone know what this error is about or how to troubleshoot? Most samples work fine, but some thr...
• bowtie2 rename dataset from paired list
  Hi, I have a paired reads dataset list that I use for a bowtie2 workflow. I try to rename the ou...
• TopHat Fata Error: Fusion search fails with Bowtie2, how to try Bowtie1 option? Also truncates file during genome alignment
  I am trying to run TopHat using a GTF annotation to build a transcriptome index, and also search ...
• Tophat vs Bowtie2
  Hello, I took the fasq files and ran Tophat then Bowtie2. Is it okay to run tophat first then bo...
• Question about Alignment of barcode sequence
  For Ion torrent data (each read is like barcode sequence followed by target sequence) I tried to...
• Galaxy not running - grey color - waiting process
  Dear Madam/Sir, I am using Galaxy platform for analyzing sequences and so far it was working gre...
• This primers is to? what variety ?
  I am a new user of the Galaxy platform. I am working with GBS sequences of 273 rice variety (Indi...
• bowtie2 is stalled
  Hello! My bowtie2 runs have been in the queue for a full day. I've never seen it take this long. ...
• Bismark dataset renaming problem in Galaxy
  Hi, I am using Bismark bisulfite mapper (bowtie2) (Galaxy Version 0.10.2) in a local installation...