I have a VCF file from FreeBayes Variant caller. However I want VCF file to have dbSNP (rsID). The reference genome is hg19 (human).
GATK doesn't work on Galaxy.
How to obtain the rsIDs with VCF file on Galaxy?
use SnpEff Variant effect and annotation. There appears to be two versions installed on usegalaxy.org. Only one ((Galaxy Version 4.0.0)) appears to have the human database you want installed.