Question: bwa not recognizing fastq files
gravatar for tkirkland
7 months ago by
tkirkland0 wrote:

I am trying to map a set of fastq sequences to a custom genome, using BWA. The two setrs of triplicates are in a collection and I have run groomer on them. to convert to fastqsanger. When I try to run BWA (or BWA-mem), I get the error "No set or collection of fastqsanger availabl". Olease help - I don't know what I am doing wrong.



rna-seq • 195 views
ADD COMMENTlink written 7 months ago by tkirkland0

will BWA recognise them if you do not use the collection approach ?

ADD REPLYlink written 7 months ago by Guy Reeves1.0k

Are you using Galaxy at Please be specific about where you are using Galaxy if elsewhere. Note the public server by URL or if Cloudman is in use or if a local is in use (what Galaxy version and BWA tool version, please). Thanks! Jen, Galaxy team

ADD REPLYlink written 7 months ago by Jennifer Hillman Jackson23k
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