Question: bwa not recognizing fastq files
0
gravatar for tkirkland
7 months ago by
tkirkland0
tkirkland0 wrote:

I am trying to map a set of fastq sequences to a custom genome, using BWA. The two setrs of triplicates are in a collection and I have run groomer on them. to convert to fastqsanger. When I try to run BWA (or BWA-mem), I get the error "No set or collection of fastqsanger availabl". Olease help - I don't know what I am doing wrong.

Thanks

Theo

rna-seq • 195 views
ADD COMMENTlink written 7 months ago by tkirkland0
1

will BWA recognise them if you do not use the collection approach ?

ADD REPLYlink written 7 months ago by Guy Reeves1.0k

Are you using Galaxy at http://usegalaxy.org? Please be specific about where you are using Galaxy if elsewhere. Note the public server by URL or if Cloudman is in use or if a local is in use (what Galaxy version and BWA tool version, please). Thanks! Jen, Galaxy team

ADD REPLYlink written 7 months ago by Jennifer Hillman Jackson23k
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