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Question: MAGenTA for tn-seq analysis
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gravatar for stefano.sanselicio
17 months ago by
stefano.sanselicio • 0
stefano.sanselicio • 0 wrote:

Hello I am Stefano Sanselicio, an early post-doc at the university of Lausanne (Switzerland). I should do some analysis about my tn-seq and I am not an expert in bioinformatic and recently a new tool for analysis of tn-seq (called MAGenTA) came out ( https://academic.oup.com/bioinformatics/article/doi/10.1093/bioinformatics/btx320/3819196/MAGenTA-a-Galaxy-implemented-tool-for-complete-Tn ). In the article they say that this tool is available at the Galaxy public ToolShed repository. But in the galaxy website (in tools) I cannot find it even in the workflow (they also say that they already made a workflow).

Could you tell me where I can find this tool in Galaxy hub, please? Am I searching in the wrong area?

thank you very much, in advance,

Stefano
galaxy • 493 views
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modified 17 months ago by Hotz, Hans-Rudolf • 1.8k • written 17 months ago by stefano.sanselicio • 0
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gravatar for Hotz, Hans-Rudolf
17 months ago by
Hotz, Hans-Rudolf • 1.8k
Switzerland
Hotz, Hans-Rudolf • 1.8k wrote:

Hi Stefano

The tools are available in the toolshed for instalation in a local galaxy server. For example: https://toolshed.g2.bx.psu.edu/repository?repository_id=0a61497e0a9ad2d9&changeset_revision=2efae0932a7a

However, not every tool available in the toolshed is set up to execute on galaxy main (https://usegalaxy.org/) .

I will send you an e-mail (off-line) with the contact details of someone working with Galaxy at UNIL

Regards, Hans-Rudolf
ADD COMMENT • link written 17 months ago by Hotz, Hans-Rudolf • 1.8k
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