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• Jobs have been stuck for days
  Hi, I'm currently running 20 jobs on Galaxy Main and they've all been stuck at an alignment step...
• Tophat is stuck in "jobs waiting to run"
  Just had a quick question: I'm trying to use tophat, but my jobs are stuck in waiting to run. The...
• Job stuck in queue
  I have 2 Htseq-count jobs that have been in the queue for about 2 days now and was wondering if t...
• "Jobs Is Waiting To Run" All Day On Main
  Since earlier today (at least 6 hours), all of my jobs have been stuck in the "waiting to run" st...
• Galaxy Jobs Stuck on "The job is waiting to run"
  Hello, A lot of jobs on my galaxy genome browser are not responding. They are all stuck on waitin...
• Jobs on local galaxy instance stuck in "New" state - Data Library datasets to blame?
  After updating our Galaxy instance to use two processes (one for web, the other as a job handler)...
• Stuck jobs on Galaxy
  Can someone please check on my jobs pending to happen? They were all initiated at the same time a...
• Continuous processing for jobs where metadata is auto-detected
  I have a local installation of galaxy. I designated that my job "auto-detect metadata." The jo...
• "Job Is Waiting To Run" Forever
  For the last two days, nearly every job submitted to Galaxy at "main.g2.bx.psu.eud" has been succ...
• Cufflinks never start??
  I am still a newbie on Galaxy. I mapped my RNA-seq reads by TopHat without problem (I believe), ...
• Trinity and Unicycler jobs queued for a long time?
  I have had several Unicycler and Trinity jobs that seem to be stuck waiting for a long time. Trie...
• Jobs Stuck On Galaxy
  Hi, I submitted Bowtie and BWA alignment jobs on two relatively small fastq files, and the jobs ...
• Galaxy Stuck On TopHat for more than 3 hours
  My files have been stuck in tophat for more than 3 hours although their sizes are not big. Why is...
• Help: Mapping With Bowtie Does Not Start
  Hello, I am trying to map sequences with Bowtie for Illumina. I have been waiting for a whole d...
• Public Galaxy stuck
  Is anyone else having issues using the public galaxy server? I've been creating jobs and none of ...
• Bwa/Bowtie Not Running
  Hi- I'm having trouble getting bwa to run on the main server. It seems stuck in the "waiting to ...
• Local instance: This job is waiting to run
  Hi all I'm loading a fastq file (90Mb....so not a big one) on my local instance of galaxy, but i...
• Long wait time for Tophat
  I have a few RNAseq samples running TopHat for over 3 days now. I was wondering if you guys have ...
• Internal server error?
  Hello,  My instance of Galaxy seems to have run into an Internal Server Error -- Galaxy seems to...
• Jobs waiting to run forever on one user but not another
  We have two users in our lab registered in the Main galaxy server. My user works just fine, while...
• Mapping Does Not Start
  Hi, I am trying to map sequences with Bowtie. Have been waiting for a few hours now but it still...
• Stuck in waiting phase. Can someone check my history to see if something is stalling?
  My jobs are currently stuck in waiting phase and I was curious if anyone could check if it's the ...
• Unicycler genome assembly failure
  Hi all, I have some Illumina reads and Nanopore reads I'd like to assemble using Unicycler. I u...