I started TopHat analysis on April 15th. Howevere, the job is still working (today is April 26th) and have not done, yet. I used same reference genome and similar sample data. Therefore, I don't think my BAM file or reference genome data have a problem. I'm wondering whether there is any problem with Galaxy server. I would like to know any suggstion to complete the analysis.
Thank you for your help and time.