Question: Error of installing local Galaxy
0
gravatar for atcglj
9 months ago by
atcglj10
atcglj10 wrote:

I am trying to install my own local galaxy in my computer. It is OK to run git clone -b release_17.01 https://github.com/galaxyproject/galaxy.git But I got an error message as below when I typed sh run.sh Could anybody help me? Thanks.

sh run.sh

Activating virtualenv at .venv Requirement already satisfied: pip>=8.1 in ./.venv/lib/python2.7/site-packages Collecting bx-python==0.7.3 (from -r requirements.txt (line 2)) Downloading https://wheels.galaxyproject.org/packages/bx_python-0.7.3-cp27-cp27mu-manylinux1_x86_64.whl (2.1MB) 1% |? | 30kB 1.6kB/s eta 0:22:13Exception: Traceback (most recent call last): File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/basecommand.py", line 215, in main status = self.run(options, args) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/commands/install.py", line 335, in run wb.build(autobuilding=True) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/wheel.py", line 749, in build self.requirement_set.prepare_files(self.finder) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/req/req_set.py", line 380, in prepare_files ignore_dependencies=self.ignore_dependencies)) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/req/req_set.py", line 620, in _prepare_file session=self.session, hashes=hashes) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/download.py", line 821, in unpack_url hashes=hashes File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/download.py", line 659, in unpack_http_url hashes) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/download.py", line 882, in _download_http_url _download_url(resp, link, content_file, hashes) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/download.py", line 603, in _download_url hashes.check_against_chunks(downloaded_chunks) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/utils/hashes.py", line 46, in check_against_chunks for chunk in chunks: File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/download.py", line 571, in written_chunks for chunk in chunks: File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/utils/ui.py", line 139, in iter for x in it: File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/download.py", line 560, in resp_read decode_content=False): File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/response.py", line 357, in stream data = self.read(amt=amt, decode_content=decode_content) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/response.py", line 324, in read flush_decoder = True File "/usr/lib64/python2.7/contextlib.py", line 35, in __exit__ self.gen.throw(type, value, traceback) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/response.py", line 246, in _error_catcher raise ReadTimeoutError(self._pool, None, 'Read timed out.') ReadTimeoutError: HTTPSConnectionPool(host='wheels.galaxyproject.org', port=443): Read timed out.

galaxy • 302 views
ADD COMMENTlink written 9 months ago by atcglj10
0
gravatar for Jennifer Hillman Jackson
9 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Have you tried run.sh since this was posted? It looks like a network timeout. Thanks, Jen, Galaxy team

ADD COMMENTlink written 9 months ago by Jennifer Hillman Jackson23k
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