Question: Error of installing local Galaxy
gravatar for atcglj
20 months ago by
atcglj10 wrote:

I am trying to install my own local galaxy in my computer. It is OK to run git clone -b release_17.01 But I got an error message as below when I typed sh Could anybody help me? Thanks.


Activating virtualenv at .venv Requirement already satisfied: pip>=8.1 in ./.venv/lib/python2.7/site-packages Collecting bx-python==0.7.3 (from -r requirements.txt (line 2)) Downloading (2.1MB) 1% |? | 30kB 1.6kB/s eta 0:22:13Exception: Traceback (most recent call last): File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/", line 215, in main status =, args) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/commands/", line 335, in run File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/", line 749, in build self.requirement_set.prepare_files(self.finder) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/req/", line 380, in prepare_files ignore_dependencies=self.ignore_dependencies)) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/req/", line 620, in _prepare_file session=self.session, hashes=hashes) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/", line 821, in unpack_url hashes=hashes File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/", line 659, in unpack_http_url hashes) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/", line 882, in _download_http_url _download_url(resp, link, content_file, hashes) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/", line 603, in _download_url hashes.check_against_chunks(downloaded_chunks) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/utils/", line 46, in check_against_chunks for chunk in chunks: File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/", line 571, in written_chunks for chunk in chunks: File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/utils/", line 139, in iter for x in it: File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/", line 560, in resp_read decode_content=False): File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/", line 357, in stream data =, decode_content=decode_content) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/", line 324, in read flush_decoder = True File "/usr/lib64/python2.7/", line 35, in __exit__ self.gen.throw(type, value, traceback) File "/home/mypath/galaxy/.venv/lib/python2.7/site-packages/pip/_vendor/requests/packages/urllib3/", line 246, in _error_catcher raise ReadTimeoutError(self._pool, None, 'Read timed out.') ReadTimeoutError: HTTPSConnectionPool(host='', port=443): Read timed out.

galaxy • 660 views
ADD COMMENTlink written 20 months ago by atcglj10
gravatar for Jennifer Hillman Jackson
20 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Have you tried since this was posted? It looks like a network timeout. Thanks, Jen, Galaxy team

ADD COMMENTlink written 20 months ago by Jennifer Hillman Jackson25k
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