I am currently working on a course project. Using the main galaxy server, I am having issues running any sort of analysis with the fast q files provided. When trying to map the data using the BWA-MEM tool, the required input fields read - No FASTQ Sanger dataset available. I have tried the FASTQ Groomer tool to convert the files to Sanger format, however, downstream analysis on this data produces errors. Any ideas on how I can convert the provided fastq files to fastsanger format that will run successfully using the BWA-MEM mapping tool?
Please feel free to use the following link to look at my history for an example of what I mean.
Any feedback would be helpful.