Question: Pliz suggest some links or worth readings to clear the doubt
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21 months ago by
sanathoi.guru10 wrote:

Hi everyone, I have been using Galaxy server for DEG (tuxedo2) and am getting cuffdiff results with some unexpected features, specially c10. I am testing two datasets, one normal and another infected, 3 datasets each condition.

normal  infected    OK  137.865 0   -inf    -   5e-05   5.14778e-05 yes

what does "-inf" meant for? I was searching for cufflink documentations but i can't open it after download. please suggest me some worth reading to clear this doubt.

ADD COMMENTlink modified 21 months ago by Devon Ryan1.9k • written 21 months ago by sanathoi.guru10
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21 months ago by
Devon Ryan1.9k
Devon Ryan1.9k wrote:

Negative infinity, which suggests that one condition has no measurable expression.

As an aside, I would strongly encourage to stop using cuffdiff. You'd be better served with featureCounts/htseq-count and then DESeq2.

ADD COMMENTlink written 21 months ago by Devon Ryan1.9k
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