Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: We can`t install Pilon and VTTools to our Galaxy cloud instance, how to fix that?
0
gravatar for msprindzhuk
21 months ago by
msprindzhuk • 50
msprindzhuk • 50 wrote:

We can`t install Pilon and VTTools to our Galaxy cloud instance, how to fix that? Should we change smth in galaxy.ini and .xml files? Some tools hang in yellow Cloning stage and do not appear in menu. Need advices how to tune it properly. Thx.
vttools pilon • 599 views
ADD COMMENT • link •
modified 21 months ago by Jennifer Hillman Jackson ♦ 25k • written 21 months ago by msprindzhuk • 50
0
gravatar for Jennifer Hillman Jackson
21 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Both of these repositories install into a local 17.10 Galaxy from the Main Tool Shed with managed dependencies checked, including Conda as a resolver.

Double check that managed dependencies is used when installing and that the dependency resolvers are set up: https://docs.galaxyproject.org/en/master/admin/dependency_resolvers.html

After you make changes, restart Galaxy and then uninstall and reinstall the tools.

Thanks, Jen, Galaxy team
ADD COMMENT • link written 21 months ago by Jennifer Hillman Jackson ♦ 25k

Thank you, should we change something in XML or .ini files? Will standard Galaxy instance work on cloud or should we switch to the CloudMan or the Globe variation?

ADD REPLY • link written 21 months ago by msprindzhuk • 50

Hello - Cloudman is the primary version of a standard Galaxy install designed to work with AWS cloud resources. Please see: https://new.galaxyproject.org/cloudman/

The help Enis provided about other alternatives was already posted to this question from you: https://biostar.usegalaxy.org/p/21760/

Let try to keep all the question in the same threads that are follow-up when suggested help does not resolve your problem. After reviewing the shared help, be specific about the exact problem that is still present, steps you have done, and the like - otherwise, it is difficult to offer more help.

Thanks, Jen

ADD REPLY • link modified 21 months ago • written 21 months ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 174 users visited in the last hour