Question: Cuffdiff Test Statistic Explanation
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gravatar for kjh318
14 months ago by
kjh3180
kjh3180 wrote:

Hi there, I am curious as to what statistical test cuffdiff uses to determine the test statistic and its significance. I have tried finding it in the literature but its explanation is usually vague. Any guidance would be greatly appreciated! -Mike

rna-seq cuffdiff • 1.2k views
ADD COMMENTlink modified 14 months ago by Jennifer Hillman Jackson24k • written 14 months ago by kjh3180
0
gravatar for Jennifer Hillman Jackson
14 months ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello,

Search for the keywords "test stat" at this wiki: http://cole-trapnell-lab.github.io/cufflinks/cuffdiff/

The full protocol with details about how the statistics are computed/used is defined in the associated publication: http://www.nature.com/nprot/journal/v7/n3/full/nprot.2012.016.html

Thanks, Jen, Galaxy team

ADD COMMENTlink written 14 months ago by Jennifer Hillman Jackson24k
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