Question: Problem in cuffdiff
gravatar for sinha.puja
14 months ago by
sinha.puja0 wrote:

Hi everyone...after doing cuffdiff when viewing the data in tabular format of gene differential expression testing I am finding no fold change values, no test statistics, p and q values are 1 and there is no significant found in all over the how this is possible...explain...or I think I have done something wrong but one step I have a doubt that before doing tophat, the column has options like paired end sequencing or single...mine paired end but after that there is options like forward reads and reverse reads...I have placed forward reads and reverse reads separately so do I need to pair forward and reverse reads before putting in the option..???

galaxy • 287 views
ADD COMMENTlink modified 14 months ago by Jennifer Hillman Jackson25k • written 14 months ago by sinha.puja0
gravatar for Jennifer Hillman Jackson
14 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Resolved issue.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 14 months ago by Jennifer Hillman Jackson25k
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