Question: Min Alignement Count
0
Davide Degli Esposti • 80 wrote:
Dear Galaxy team,
I am performing a differential expression analysis with a cufflinks-
cuffmerge-cuffdiff workflow. I was wondering if the default value of
10 fragments for min alignment count is intended to exclude from the
significance test all the loci under 10 counts across all samples or
if the counts are 10 for at least one sample the test is performed?
I thank you for your help
Best regards
davide
Davide Degli Esposti, PhD
Epigenetic (EGE) Group
International Agency for Research on Cancer
Tel. +33 4 72738036
Fax. +33 4 72738322
150, cours Albert Thomas
69372 Lyon Cedex 08
France
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modified 5.6 years ago
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Jennifer Hillman Jackson ♦ 25k
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written
5.6 years ago by
Davide Degli Esposti • 80
