Question: Where can I find the Trinity statistics?
0
gravatar for binibe
4 weeks ago by
binibe60
binibe60 wrote:

Hi,

This is maybe a stupid question, but I am new to RNA sequencing and the Galaxy environment - so I hope some experienced users can help me out.

I just performed a Trinity assembly (from PE reads data) - and now I want to see the statistics on the assembly (# contigs, N50 etc.).

It was my impression that I would end up with a log, the fasta with all sequences - and then an assembly statistics. But I only see the log and the fasta file.

Do you know how I can get the statistics on the assembly and see how well it did?

Thank you!

assembly trinity rna-seq • 50 views
ADD COMMENTlink modified 27 days ago by raggieapauly0 • written 4 weeks ago by binibe60
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 110 users visited in the last hour