Question: Where can I find the Trinity statistics?
0
gravatar for binibe
6 months ago by
binibe70
binibe70 wrote:

Hi,

This is maybe a stupid question, but I am new to RNA sequencing and the Galaxy environment - so I hope some experienced users can help me out.

I just performed a Trinity assembly (from PE reads data) - and now I want to see the statistics on the assembly (# contigs, N50 etc.).

It was my impression that I would end up with a log, the fasta with all sequences - and then an assembly statistics. But I only see the log and the fasta file.

Do you know how I can get the statistics on the assembly and see how well it did?

Thank you!

assembly trinity rna-seq • 214 views
ADD COMMENTlink modified 6 months ago by raggieapauly0 • written 6 months ago by binibe70
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 55 users visited in the last hour