Question: Where can I find the Trinity statistics?
gravatar for binibe
8 months ago by
binibe70 wrote:


This is maybe a stupid question, but I am new to RNA sequencing and the Galaxy environment - so I hope some experienced users can help me out.

I just performed a Trinity assembly (from PE reads data) - and now I want to see the statistics on the assembly (# contigs, N50 etc.).

It was my impression that I would end up with a log, the fasta with all sequences - and then an assembly statistics. But I only see the log and the fasta file.

Do you know how I can get the statistics on the assembly and see how well it did?

Thank you!

assembly trinity rna-seq • 263 views
ADD COMMENTlink modified 8 months ago by raggieapauly0 • written 8 months ago by binibe70
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 124 users visited in the last hour