Question: ORegAnno options in get data
gravatar for ybogoch
24 months ago by
ybogoch0 wrote:

Hi In the UCSC Genome Browser on Human Dec. 2013 (GRCh38/hg38) Assembly there is the orregano track. In the browser there is an option for choosing just TFBS or miRNA binding sites. Is there any way to do this in galaxy when getting the info (Get data:UCSC Main table browser)

Thanks Yoel

galaxy • 439 views
ADD COMMENTlink modified 24 months ago by Jennifer Hillman Jackson25k • written 24 months ago by ybogoch0
gravatar for Jennifer Hillman Jackson
24 months ago by
United States
Jennifer Hillman Jackson25k wrote:


Not specifically, but there are many text search/selection functions. Some interpret the datatype with custom filters. Others act on the data as tabular. You can also compare datasets (subtract, common line, distinct lines).

The list of potential tools is too long to list as much depends on the input format. Try a tool search using the datatype to start. Then review tools in the group Text Manipulation and Join, Subtract and Group.

If you want to share a snippet of the file (where format is preserved) and note which value you wish to filter on, we can offer more specific advice.

The other route is do the manipulation at UCSC Browser, then move the new filtered track into Galaxy for downstream analysis.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 24 months ago by Jennifer Hillman Jackson25k
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