Question: empty QUAL filed in Naive Variant caller vcf output
gravatar for ambi1999
2.0 years ago by
ambi199930 wrote:


The QUAL field in vcf output of Naive Variant Caller is empty for all the variants. Any reason? Attached is screenshot of the vcf. I will email my galaxy history link to, and include a link to this post so you can associate the two.

Note: I do get QUAL values if I run FreeBayes tool.

enter image description here

Thanks for your help.

Cheers, Ambi.

ADD COMMENTlink modified 2.0 years ago • written 2.0 years ago by ambi199930

Thanks for the bug report. We'll be looking at it once is back up (excepted to be around 5pm EST). Thanks! Jen, Galaxy team

ADD REPLYlink written 2.0 years ago by Jennifer Hillman Jackson25k
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