Question: Queue time for tool "NGS Mapping: Map with BWA-MEM" at
gravatar for jsp116
2.0 years ago by
jsp11610 wrote:

The past 2 nights I've attempted to follow the steps outlined in: The step 'Map with BWA-MEM' is repeatedly not executing. I refresh the history, allowing to process overnight- still not completed. Steps taken: Deleted and purged history Reloaded dataset from Data Libraries=>Tutorial=>Pooled Variant Calling I'm seeking guidance on how to troubleshoot this.

Regards, Scott

mapping bwa-mem queue job galaxy • 719 views
ADD COMMENTlink modified 2.0 years ago by Jennifer Hillman Jackson25k • written 2.0 years ago by jsp11610


I am having the same issue with the gentleman's comment above. How long is it considered too long when the job is running (grey-colored)? What is the the maximum length of a job run time?

Thank you,


ADD REPLYlink written 2.0 years ago by kmr120
gravatar for Jennifer Hillman Jackson
2.0 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello Scott,

By "not executing" you mean the job is grey colored and queued, correct? The server in use is

The queue for this type of job is a bit longer right now. Launch the jobs and allow them to stayed queued until executed. If you delete and re-run, the job moves back to the end of the queue - extending wait time.

Best, Jen, Galaxy team

ADD COMMENTlink written 2.0 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 169 users visited in the last hour