Question: Estimating Tophat execution run-time
gravatar for julieac1
15 months ago by
julieac10 wrote:

I was wondering how long it usually takes to map a read on TopHat? It has been over 12 hours and the job is it running.

tophat run-time job execution • 434 views
ADD COMMENTlink modified 15 months ago by Jennifer Hillman Jackson24k • written 15 months ago by julieac10
gravatar for Jennifer Hillman Jackson
15 months ago by
United States
Jennifer Hillman Jackson24k wrote:


How long a job takes to process depends on the input content/size, the tool parameters, how large/finished the target genome is, and the compute environment. This all makes estimations about how long a job should run difficult.

The best advice is to allow launched jobs to complete. Stopping and restarting will put the job at the back of the queue again, and then the whole processing starts again, increasing the delay.


Best, Jen, Galaxy team

ADD COMMENTlink written 15 months ago by Jennifer Hillman Jackson24k
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