Question: Estimating Tophat execution run-time
0
gravatar for julieac1
13 months ago by
julieac10
julieac10 wrote:

I was wondering how long it usually takes to map a read on TopHat? It has been over 12 hours and the job is it running.

tophat run-time job execution • 367 views
ADD COMMENTlink modified 13 months ago by Jennifer Hillman Jackson23k • written 13 months ago by julieac10
0
gravatar for Jennifer Hillman Jackson
13 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

How long a job takes to process depends on the input content/size, the tool parameters, how large/finished the target genome is, and the compute environment. This all makes estimations about how long a job should run difficult.

The best advice is to allow launched jobs to complete. Stopping and restarting will put the job at the back of the queue again, and then the whole processing starts again, increasing the delay.

Details: https://wiki.galaxyproject.org/Support#Dataset_status_and_how_jobs_execute

Best, Jen, Galaxy team

ADD COMMENTlink written 13 months ago by Jennifer Hillman Jackson23k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 104 users visited in the last hour