I'm having problems adding custom tools to a docker galaxy instance. Using galaxy docker https://github.com/bgruening/docker-galaxy-blast with export option.
1) i tried adding my tools into the galaxy-central/tools directory (galaxy-central/tools/mytools). And I put my tool_conf.xml in galaxy-central/config. But, galaxy-central/tools/mytools directory gets deleted every time I start docker galaxy.
2) then I put my tool defs under galaxy-central (galaxy-central/mytools), trying relative and absolute paths in config/tool_conf.xml in section. None of these seem to work. My tools don't show up in the sidebar.
<toolbox> <section id="MyTools" name="My Tools"> <tool file="/var/www/galaxy_storage/galaxy-central/mytools/mytooldef_a.xml" /> <tool file="../mytools/mytooldef_b.xml" /> </section> </toolbox>
How can I get this working with the docker instance? Thanks.