Question: Delay in running jobs
0
gravatar for hss
20 months ago by
hss20
United States
hss20 wrote:

I have had several wig files in the que for converting to BigWig one has been waiting for more than 2 hours. Is there an issue with the Galaxy server? The files are big ~12gb but I have not had any issues on the previous day converting these files.

Thank

Scott

chip-seq • 496 views
ADD COMMENTlink modified 20 months ago by Nate Coraor3.1k • written 20 months ago by hss20
1
gravatar for Nate Coraor
20 months ago by
Nate Coraor3.1k
United States
Nate Coraor3.1k wrote:

Jobs weren't moving due to a recent infrastructure change (we added some new VMs to run Galaxy's job handlers), this has been fixed and jobs are running now. There may be some delays as Galaxy and the cluster work through the backlog of jobs. Sorry for the inconvenience and thanks for reporting this.

ADD COMMENTlink written 20 months ago by Nate Coraor3.1k

Hi Nate, Just wanted to let you know that there is still an issue with the Galaxy Server running file conversions. I uploaded a 13GB dataset last evening and as of 7 AM pacific time it still has not run. This is a conversion from wiggle to BigWig.

ADD REPLYlink written 20 months ago by hss20

Hi Nate,

Just wanted to let you know that there is still an issue with the Galaxy Server running file conversions. I uploaded a 13GB dataset last evening and as of 7 AM pacific time it still has not run. This is a conversion from wiggle to BigWig.

Scott

H. Scott Stadler Ph.D.

Associate Professor Molecular and Medical Genetics

Oregon Health & Science University

Principal Investigator

Division of Skeletal Biology

Shriners Hospitals for Children

3101 SW Sam Jackson Park Rd.

Portland, OR 97239

503-221-3447 (voice)

503-241-3451 (fax)

ADD REPLYlink written 20 months ago by hss20

Latest as of just now: A: Public Galaxy stuck

In short, issue resolved, and please allow queued jobs to execute.

Thanks! Jen, Galaxy team

ADD REPLYlink written 20 months ago by Jennifer Hillman Jackson24k
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