Can't start Galaxy server

Question: Can't start Galaxy server

2.3 years ago by

I can't start up my Galaxy server, I tried running on both dev and master branches. I also tried changing python and pip versions (I tried python 2.7 and 2.7.12, and pip 1.2.2, 1.5.1, 8.2.1). None of these worked out and this error still persists:

Command "/Users/jerome.indefenzo/.pyenv/versions/2.7.12/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/private/var/folders/wh/5mvrmcxs6mddfc7xpywgpx9w0000gp/T/pip-build-UQaU2X/mercurial/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/wh/5mvrmcxs6mddfc7xpywgpx9w0000gp/T/pip-FpVL0j-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/wh/5mvrmcxs6mddfc7xpywgpx9w0000gp/T/pip-build-UQaU2X/mercurial

Any help is much appreciated. For the complete error/warning dump, here's the log: http://www.hastebin.com/omuguvulol.js

software error galaxy server • 1.0k views

ADD COMMENT • link •

modified 2.3 years ago by Nate Coraor ♦ 3.2k • written 2.3 years ago by jeromeindefenzo • 0

do you follow: https://wiki.galaxyproject.org/Admin/GetGalaxy ?

what are the actual commands you have executed?

ADD REPLY • link written 2.3 years ago by Hotz, Hans-Rudolf • 1.8k

yup, I'm getting this error on a Mac OS X 10.9.5, right after running sh run.sh.

After pip downloads all the packages, the error occurs during installation.

ADD REPLY • link written 2.3 years ago by jeromeindefenzo • 0

I am sorry, I can't help here. I have never seen this kind of (compiler?) problem on Mac OS X

ADD REPLY • link written 2.3 years ago by Hotz, Hans-Rudolf • 1.8k

2.3 years ago by

Nate Coraor ♦ 3.2k

United States

Nate Coraor ♦ 3.2k wrote:

It looks like pip is failing to download our precompiled wheels (likely due to a platform incompatibility) and failing to compile Mercurial. Where did your Python interpreter (in /Users/jerome.indefenzo/.pyenv/versions/2.7.12) come from?

ADD COMMENT • link written 2.3 years ago by Nate Coraor ♦ 3.2k

I'm using pyenv to manage python versions.

https://github.com/yyuu/pyenv

It automatically downloads packaged python versions and stores each on ~/.pyenv/versions. On my Galaxy setup directory, I specified a file .python-version to alter python versions instead of redownloading python from brew or building it manually.

ADD REPLY • link modified 2.3 years ago • written 2.3 years ago by jeromeindefenzo • 0

What does the output of python -c 'import pip. print pip.pep425tags.get_platform()' return?

ADD REPLY • link written 2.3 years ago by Nate Coraor ♦ 3.2k

python -c 'import pip; print pip.pep425tags.get_platform()' returns macosx_10_9_x86_64

ADD REPLY • link modified 2.3 years ago • written 2.3 years ago by jeromeindefenzo • 0

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