Question: Cuffdiff taking forever on AWS
0
gravatar for nicole.hawkins
22 months ago by
nicole.hawkins0 wrote:

I have been running Cuffdiff for ~36 hours on a two condition comparison... And it is not finishing, I am using the r3.2x instance. Should I change instances? I seems like it went much faster when I was using the local usegalaxy instance. Thanks!

aws cloudman cuffdiff • 529 views
ADD COMMENTlink modified 22 months ago by Jennifer Hillman Jackson25k • written 22 months ago by nicole.hawkins0
0
gravatar for Jennifer Hillman Jackson
22 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Allocating more resources (larger cluster/nodes, higher memory allocation) could help. Or you can wait for the job to complete. If it fails for memory (it shouldn't time out on Cloudman with default job resource options), then you will definitely need to move to using an instance/cluster nodes with more dedicated memory.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 22 months ago by Jennifer Hillman Jackson25k
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