I am working on a local instance of galaxy. I am using uswgi and 2 handlers, with htcondor. When I try to use new tools installed from toolshed Galaxy has a strange behaviour.
When I launch a job, in galaxy webpage I have this error :
This tool was disabled before the job completed. Please contact your Galaxy administrator.
There is no error in uwsgi.log, but if I look in handler.log I can see this :
galaxy.jobs DEBUG 2016-06-09 12:34:57,421 (26184) Working directory for job is: /home/galaxy/Formation/galaxy/database/job_working_directory/026/26184 galaxy.jobs.handler WARNING 2016-06-09 12:34:57,421 (26184) Tool 'toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_databases/4.0.0' removed from tool config, unable to run job galaxy.datatypes.metadata DEBUG 2016-06-09 12:34:57,543 Cleaning up external metadata files galaxy.jobs.handler ERROR 2016-06-09 12:34:57,565 (26184) Error checking job readiness
galaxy.jobs DEBUG 2016-06-09 12:45:31,451 (26185) Working directory for job is: /home/galaxy/Formation/galaxy/database/job_working_directory/026/26185 galaxy.jobs.handler WARNING 2016-06-09 12:45:31,451 (26185) Tool 'toolshed.g2.bx.psu.edu/repos/nml/spades/spades/1.3.1' removed from tool config, unable to run job galaxy.datatypes.metadata DEBUG 2016-06-09 12:45:31,770 Cleaning up external metadata files galaxy.jobs.handler ERROR 2016-06-09 12:45:31,792 (26185) Error checking job readiness
Also, sometimes these tools disappear from the tool menu on the left and it seems they are not available anymore. But when I refresh (several times) the galaxy webpage, they come back.
I don't really understand this behaviour, and I don't know where I should start to understand it. Do you have any idea ?