Error uploading files

galaxy.tools DEBUG 2016-06-28 12:40:23,959 Validated and populated state for tool request (74.210 ms) galaxy.tools.actions.upload DEBUG 2016-06-28 12:40:24,075 Persisted uploads (53.067 ms) galaxy.tools.execute WARNING 2016-06-28 12:40:24,076 There was a failure executing a job for tool [upload1] - No data was entered in the upload form, please go back and choose data to upload. galaxy.tools.execute DEBUG 2016-06-28 12:40:24,077 Executed 1 job(s) for tool upload1 request: (116.821 ms)

2.4 years ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This part of the message indicates a usage problem:

No data was entered in the upload form, please go back and choose data to upload.

Help for the upload tool is here: https://wiki.galaxyproject.org/Support#Loading_data

If you continue to have problems, try the same operation at http://usegalaxy.org, using the exact same methods. If it also errors, you could share a screenshot or two of the upload form settings and subsequent results and we can try to help troubleshoot from there.

Cheers, Jen, Galaxy team

ADD COMMENT • link written 2.4 years ago by Jennifer Hillman Jackson ♦ 25k

Hi, I have the same problem @matthias.desmet had, but running galaxy under centOS6.9. Also, I am using nginx to serve galaxy and manage uploads and downloads.

When trying to upload a local file through the interface to our local Galaxy instance I'm getting a Failed: Bad Request (400) error. The Galaxy log reports the following

10.15.60.147 - - [06/Feb/2018:12:23:16 +0200] "GET /api/histories/f597429621d6eb2b/contents?keys=type_id%2Celement_count&details=0a248a1f62a0cc04%2C03501d7626bd192f%2C3f5830403180d620%2Ce85a3be143d5905b%2Cc9468fdb6dc5c5f1%2C2a56795cad3c7db3%2C4b187121143038ff&order=hid&v=dev&q=history_content_type&q=deleted&q=purged&q=visible&qv=dataset_collection&qv=False&qv=False&qv=True HTTP/1.0" 200 - "http://172.23.2.60/" "Mozilla/5.0 (X11; Linux x86_64; rv:52.0) Gecko/20100101 Firefox/52.0" galaxy.tools DEBUG 2018-02-06 12:23:24,911 Validated and populated state for tool request (178.707 ms) galaxy.tools.actions.upload DEBUG 2018-02-06 12:23:25,034 Persisted uploads (58.649 ms) galaxy.tools.execute WARNING 2018-02-06 12:23:25,035 There was a failure executing a job for tool [upload1] - No data was entered in the upload form, please go back and choose data to upload. galaxy.tools.execute DEBUG 2018-02-06 12:23:25,035 Executed 1 job(s) for tool upload1 request: (123.453 ms) 10.15.60.147 - - [06/Feb/2018:12:23:24 +0200] "POST /api/tools HTTP/1.0" 400 - "http://172.23.2.60/" "Mozilla/5.0 (X11; Linux x86_64; rv:52.0) Gecko/20100101 Firefox/52.0"

But when uploading the same file from the "Paste/Fetch data" option, it works perfectly. Downloading data also works fine. I have also tested the file integrity uploading it to https://usegalaxy.org/ in both ways and it works.

Any idea what's going wrong here?

Thanks,

Miguel

ADD REPLY • link modified 9 months ago • written 9 months ago by migueljuliamolina • 0

Fixed, the problem is the whitespaces in the code of the tutorial: https://docs.galaxyproject.org/en/master/admin/special_topics/nginx.html

ADD REPLY • link written 9 months ago by migueljuliamolina • 0

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