Question: Coverage for specific genes and exons
0
bryantl • 90 wrote:
I am using a whole exome sequencing dataset to look for potential pathogenic mutations. Overall, I have good coverage, but some regions of interest do not have good coverage and generate a false negative result. Is there a way to check coverage in a list of genes using galaxy to know if any have poor coverage? Right now I am checking by looking at the genes of interest in the UCSC genome browser, but that is very time consuming. Any suggestions are appreciated.
ADD COMMENT
• link
•
modified 2.4 years ago
by
Jennifer Hillman Jackson ♦ 25k
•
written
2.4 years ago by
bryantl • 90
