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Question: cuffmerge-Use Sequence Data
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gravatar for adsaxena
2.5 years ago by
adsaxena • 0
adsaxena • 0 wrote:

Hi!

I am using cuffmerge to merge 6 different transcripts.gtf generated by cufflinks. When I execute with 'Use Sequence Data' option set to YES and choose genome.fa from history, I get "The selected case is unavailable/invalid." for the Use Sequence Data field.

My genome.fa file is fine and was used for Index/alignments with the STAR aligner.

Could someone please help?

thanks in advance,

Cheers Adi
rna-seq software error galaxy cufflinks • 639 views
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modified 2.5 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.5 years ago by adsaxena • 0

Hi! It seems to have been a temporary unavailability issue and cuffmerge is running fine now. Sorry for the bother.

ADD REPLY • link written 2.5 years ago by adsaxena • 0
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gravatar for Jennifer Hillman Jackson
2.5 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello Adi,

Thanks for letting us know this is resolved. (My post is just to close out the ticket).

Jen, Galaxy team
ADD COMMENT • link written 2.5 years ago by Jennifer Hillman Jackson ♦ 25k
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