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Question: download files from history
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gravatar for Mic
2.5 years ago by
Mic • 70
Australia
Mic • 70 wrote:

Hi, I have 60 files which I would like to download from Galaxy. Do I have to download each one separately or is there a option to select all of them and download at once?

Thank you in advance.

Best wishes,

Mic
galaxy • 814 views
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modified 2.5 years ago by Martin Čech ♦♦ 4.9k • written 2.5 years ago by Mic • 70
1
gravatar for Martin Čech
2.5 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

Hi Mic,

you have to download them separately. However you can also write a short script that will download the datasets of a history through Galaxy API.
ADD COMMENT • link written 2.5 years ago by Martin Čech ♦♦ 4.9k

Could you please provide an script example?

ADD REPLY • link written 2.5 years ago by Mic • 70

The API documentation is at https://docs.galaxyproject.org/en/master/lib/galaxy.webapps.galaxy.api.html (you want to get a history, save dataset IDs and then request them for download)

Some example scripts talking to Galaxy API are available at https://github.com/galaxyproject/galaxy/tree/dev/scripts/api

ADD REPLY • link modified 2.5 years ago • written 2.5 years ago by Martin Čech ♦♦ 4.9k
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