Question: Tool error "OSError: [Errno 28] No space left on device"
0
gravatar for claudiorivero92
20 months ago by
claudiorivero920 wrote:

hi, i'm doing a cufflinks assay, and sistem always return the error:

The Galaxy framework encountered the following error while attempting to run the tool:

Traceback (most recent call last): File "/cvmfs/main.galaxyproject.org/galaxy/lib/galaxy/jobs/runners/pulsar.py", line 307, in __prepare_job remote_job_config = client.setuptool.id, tool.version) File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/client/client.py", line 75, in setup return self.setup_handler.setup(setup_args) File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/client/setup_handler.py", line 68, in setup return self.client.remote_setup(setup_args) File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/client/decorators.py", line 13, in replacement response = func(args, kwargs) File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/client/client.py", line 168, in remote_setup return self._raw_execute("setup", setup_args) File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/client/client.py", line 218, in _raw_execute return self.job_manager_interface.execute(command, args, data, input_path, output_path) File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/client/interface.py", line 142, in execute result = action(args) File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/web/routes.py", line 47, in setup return __setup(manager, job_id, tool_id=tool_id, tool_version=tool_version, use_metadata=use_metadata) File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/web/routes.py", line 52, in __setup response = setup_job(manager, job_id, tool_id, tool_version, use_metadata) File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/manager_endpoint_util.py", line 108, in setup_job job_id = manager.setup_job(job_id, tool_id, tool_version) File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/managers/stateful.py", line 60, in setup_job job_id = self._proxied_manager.setup_job(args, *kwargs) File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/managers/base/external.py", line 31, in setup_job return self._setup_job_for_job_id(job_id, tool_id, tool_version) File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/managers/base/directory.py", line 48, in _setup_job_for_job_id self._setup_job_directory(job_id) File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/managers/base/__init__.py", line 145, in _setup_job_directory job_directory.setup() File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/managers/base/__init__.py", line 278, in setup self._directory_maker.make(self.job_directory) File "/cvmfs/main.galaxyproject.org/venv/lib/python2.7/site-packages/pulsar/managers/base/__init__.py", line 397, in make os.mkdir(makedir_args) OSError: [Errno 28] No space left on device: '/jetstream/tacc-scratch0/main/jobs/12759454'

and follow this message

Tool execution generated the following error message:

failure preparing job

I'm sure that the problem is not my data, because i ran these before. If anyone know the solution please respond me. Thanks

ADD COMMENTlink modified 20 months ago by Jennifer Hillman Jackson23k • written 20 months ago by claudiorivero920
0
gravatar for Nate Coraor
20 months ago by
Nate Coraor3.1k
United States
Nate Coraor3.1k wrote:

These errors have started occurring as we have expanded on to the NSF Jetstream cloud. We have increased the volume size to reduce the chances of this occurring in the future, but are still working out some of the bugs and instabilities. If you encounter this error in the future, please retry running your job, and feel free to report it if you continue to encounter it.

ADD COMMENTlink written 20 months ago by Nate Coraor3.1k
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