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Question: Eerror with cloudmap workflow
1
gravatar for husthwm
2.6 years ago by
husthwm • 30
husthwm • 30 wrote:

Hi,

There is a problem when I ran the workflow CloudMap: Hawaiian Variant Mapping with WGS data.

Error in lines(loess.smooth(x, y, span = 0.1), lwd = 5, col = "red") : could not find function "loess.smooth" There was an error creating the location plot pdf... Please try again Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load sh

The following is the link for the hisory. https://usegalaxy.org/u/wenming789/h/unnamed-history

Best

Wenming
snp software error • 727 views
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modified 2.6 years ago by Wolfgang Maier • 600 • written 2.6 years ago by husthwm • 30
0
gravatar for Wolfgang Maier
2.6 years ago by
Wolfgang Maier • 600
Germany
Wolfgang Maier • 600 wrote:

I guess, the long, technical answer to your question is that the Hawaiian SNP mapping tool from the Tool Shed is not completely functional. It misses a requirement for R in its .xml. If this diagnosis is correct, it needs a fix in the Tool Shed.

The good news is that your run still generated correct text output and that we are operating another Galaxy server specifically for the task of replotting CloudMap-style data. I just reanalyzed your data there and here is the link:

http://mapping-by-sequencing.vm.uni-freiburg.de:8080/u/wolma/h/unnamed-history

If you want to learn more about MiModD/NacreousMap, you can start here: http://celegans.de/en/mimodd or drop us an email at mimodd@googlegroups.com

Happy plotting, Wolfgang
ADD COMMENT • link written 2.6 years ago by Wolfgang Maier • 600
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