Question: Alternative to Count Covariates + Table Recalibration for Base Recalibration
0
gravatar for up652214
21 months ago by
up6522140
up6522140 wrote:

Hi I recently found out that the above tool Count Covariates fails now on the Galaxy main due to being deprecated, I was wondering if anyone knows if an alternative exists to perform the same function within another suite?

Many thanks,

Louisa

snp gatk • 400 views
ADD COMMENTlink modified 21 months ago by Jennifer Hillman Jackson23k • written 21 months ago by up6522140
0
gravatar for Jennifer Hillman Jackson
21 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

To perform these same functions, setting up a local or cloud Galaxy and installing the newer versions of the GATK tools from the Tool Shed is the alternative.

https://wiki.galaxyproject.org/BigPicture/Choices

Thanks, Jen, Galaxy team

ADD COMMENTlink written 21 months ago by Jennifer Hillman Jackson23k
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