Question: Alternative to Count Covariates + Table Recalibration for Base Recalibration
gravatar for up652214
2.2 years ago by
up6522140 wrote:

Hi I recently found out that the above tool Count Covariates fails now on the Galaxy main due to being deprecated, I was wondering if anyone knows if an alternative exists to perform the same function within another suite?

Many thanks,


snp gatk • 495 views
ADD COMMENTlink modified 2.2 years ago by Jennifer Hillman Jackson25k • written 2.2 years ago by up6522140
gravatar for Jennifer Hillman Jackson
2.2 years ago by
United States
Jennifer Hillman Jackson25k wrote:


To perform these same functions, setting up a local or cloud Galaxy and installing the newer versions of the GATK tools from the Tool Shed is the alternative.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.2 years ago by Jennifer Hillman Jackson25k
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