Question: Alternative to Count Covariates + Table Recalibration for Base Recalibration
gravatar for up652214
21 months ago by
up6522140 wrote:

Hi I recently found out that the above tool Count Covariates fails now on the Galaxy main due to being deprecated, I was wondering if anyone knows if an alternative exists to perform the same function within another suite?

Many thanks,


snp gatk • 400 views
ADD COMMENTlink modified 21 months ago by Jennifer Hillman Jackson23k • written 21 months ago by up6522140
gravatar for Jennifer Hillman Jackson
21 months ago by
United States
Jennifer Hillman Jackson23k wrote:


To perform these same functions, setting up a local or cloud Galaxy and installing the newer versions of the GATK tools from the Tool Shed is the alternative.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 21 months ago by Jennifer Hillman Jackson23k
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