Question: Alternative to Count Covariates + Table Recalibration for Base Recalibration
0
gravatar for up652214
2.4 years ago by
up6522140
up6522140 wrote:

Hi I recently found out that the above tool Count Covariates fails now on the Galaxy main due to being deprecated, I was wondering if anyone knows if an alternative exists to perform the same function within another suite?

Many thanks,

Louisa

snp gatk • 540 views
ADD COMMENTlink modified 2.4 years ago by Jennifer Hillman Jackson25k • written 2.4 years ago by up6522140
0
gravatar for Jennifer Hillman Jackson
2.4 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

To perform these same functions, setting up a local or cloud Galaxy and installing the newer versions of the GATK tools from the Tool Shed is the alternative.

https://wiki.galaxyproject.org/BigPicture/Choices

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.4 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 128 users visited in the last hour