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Question: Fatal Error Cuffmerge
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gravatar for claudiorivero92
2.6 years ago by
claudiorivero92 • 0
claudiorivero92 • 0 wrote:

I have this error, anyone know how i solve it. Error running cuffmerge. [Mon Apr 25 09:04:26 2016] Beginning transcriptome assembly merge

[Mon Apr 25 09:04:26 2016] Preparing output location cm_output/ [Mon Apr 25 09:05:12 2016] Converting GTF files to SAM [09:05:12] Loading reference annotation. Error: duplicate GFF ID 'PHASIBEAM10F001038T1' encountered! [FAILED] Error: could not execute gtf_to_sam
error fatal cuffmerge cufflinks rna-seq • 567 views
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modified 2.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.6 years ago by claudiorivero92 • 0
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gravatar for Jennifer Hillman Jackson
2.6 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Duplicated GFF IDs in reference annotation files are not accepted by this tool suite. You can either try to resolve the duplicates (remove them) or look for another annotation source. The first option is tricky and should be considered carefully.

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.6 years ago by Jennifer Hillman Jackson ♦ 25k
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