Question: Fatal Error Cuffmerge
gravatar for claudiorivero92
17 months ago by
claudiorivero920 wrote:

I have this error, anyone know how i solve it. Error running cuffmerge. [Mon Apr 25 09:04:26 2016] Beginning transcriptome assembly merge

[Mon Apr 25 09:04:26 2016] Preparing output location cm_output/ [Mon Apr 25 09:05:12 2016] Converting GTF files to SAM [09:05:12] Loading reference annotation. Error: duplicate GFF ID 'PHASIBEAM10F001038T1' encountered! [FAILED] Error: could not execute gtf_to_sam

ADD COMMENTlink modified 17 months ago by Jennifer Hillman Jackson22k • written 17 months ago by claudiorivero920
gravatar for Jennifer Hillman Jackson
17 months ago by
United States
Jennifer Hillman Jackson22k wrote:


Duplicated GFF IDs in reference annotation files are not accepted by this tool suite. You can either try to resolve the duplicates (remove them) or look for another annotation source. The first option is tricky and should be considered carefully.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 17 months ago by Jennifer Hillman Jackson22k
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