Question: how to do tophat
gravatar for 1603.neha
2.6 years ago by
1603.neha70 wrote:

i have taken 1.-SRA sequence for galaxy from ebi in fastq.qz format 2. converting it into fastqsanger format by fastqgroomer 3 run tophat ( taking reference genome hg38) on fastqgroomer output.

but there is error in tophat results.i dont know what is the problem or what mistake i have done.please help

tophat • 674 views
ADD COMMENTlink modified 2.6 years ago by Jennifer Hillman Jackson25k • written 2.6 years ago by 1603.neha70

What is the error in your tophat results?

ADD REPLYlink written 2.6 years ago by chaoyuan80
gravatar for Jennifer Hillman Jackson
2.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:



Please re-run the failed jobs as a first pass solution. There have been a few cluster failures lately due to the changes occurring at A re-run is the only way to resolve this specific type of failure. In most cases, these do not need to be reported with a bug report (unless you are unsure if it was a true cluster failure or not).

If the failure was due to memory or "wall-time" - meaning the job exceeded resources, help is here: (scroll down to see all four sections)

If a re-run fails, then there could be many other reasons for a failure. If you do not see one reported here on Biostars that matches your error (with a solution), or see a way to correct the problem in the help link Error_from_tools above, a bug report from the error dataset can be submitted and we will provide feedback. Please make sure to leave the history undeleted, the input datasets undeleted, and the original and rerun error datasets undeleted.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.6 years ago by Jennifer Hillman Jackson25k
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