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Question: how to do tophat
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gravatar for 1603.neha
2.6 years ago by
1603.neha • 70
1603.neha • 70 wrote:

i have taken 1.-SRA sequence for galaxy from ebi in fastq.qz format 2. converting it into fastqsanger format by fastqgroomer 3 run tophat ( taking reference genome hg38) on fastqgroomer output.

but there is error in tophat results.i dont know what is the problem or what mistake i have done.please help
tophat • 674 views
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modified 2.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.6 years ago by 1603.neha • 70
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What is the error in your tophat results?

ADD REPLY • link written 2.6 years ago by chaoyuan • 80
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gravatar for Jennifer Hillman Jackson
2.6 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

https://wiki.galaxyproject.org/Support#Reporting_tool_errors

Summary:

Please re-run the failed jobs as a first pass solution. There have been a few cluster failures lately due to the changes occurring at http://usegalaxy.org. A re-run is the only way to resolve this specific type of failure. In most cases, these do not need to be reported with a bug report (unless you are unsure if it was a true cluster failure or not).

If the failure was due to memory or "wall-time" - meaning the job exceeded resources, help is here: (scroll down to see all four sections) https://wiki.galaxyproject.org/Support#Error_from_tools

If a re-run fails, then there could be many other reasons for a failure. If you do not see one reported here on Biostars that matches your error (with a solution), or see a way to correct the problem in the help link Error_from_tools above, a bug report from the error dataset can be submitted and we will provide feedback. Please make sure to leave the history undeleted, the input datasets undeleted, and the original and rerun error datasets undeleted.

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.6 years ago by Jennifer Hillman Jackson ♦ 25k
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