Question: HELP with FastQC Webpage
0
gravatar for kon.klaourakis
2.4 years ago by
kon.klaourakis0 wrote:

Hello,

I have created a workflow for ChIP-Seq, yesterday everything worked fine and I was able to view the FastQC webpage. Today I have encountered some problems:

1) I tried to run in the same workflow another set of ChIP-Seq data, however the process stopped after Trimmomatic at Bowtie: This is a new dataset and not all of its data are available yet. Moreover there are no indications for an error.

2) No FastQC webpage can be viewed, nor from this run, or from the previous run that yesterday I could view normally.

Is there a problem with Galaxy? What should I do?

Thank you very much for any suggestion!

Konstantinos Klaourakis

galaxy fastqc chip-seq • 840 views
ADD COMMENTlink modified 2.4 years ago by Dannon Baker3.7k • written 2.4 years ago by kon.klaourakis0
1

Hi! The same is happening to me in this 2-3 last days, my work is almost stopped because the Galaxy options don't work properly! Today I have not been able to view the FastQC webpages of my last analysis, and also I have not been able to run Bowtie for a chipseq analysis or Cuffmerge for a RNAseq analysis. Since wednesday it was given me a lot of errors but today it is like stopped, with an exclamation symbol in the beginning of the work. Do someone know when will be this problem solved? Thanks!

ADD REPLYlink written 2.4 years ago by iraia.maialen10
0
gravatar for Jennifer Hillman Jackson
2.4 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

HTML display is temporarily non-functional. We hope to get this cleared up early next week. Please track progress here: https://github.com/jennaj/support-known-issues/wiki

Thanks for reporting the issue! Jen, Galaxy team

ADD COMMENTlink written 2.4 years ago by Jennifer Hillman Jackson25k
0
gravatar for Dannon Baker
2.4 years ago by
Dannon Baker3.7k
United States
Dannon Baker3.7k wrote:

Thanks for the report! FastQC should be functional again on usegalaxy.org now.

ADD COMMENTlink written 2.4 years ago by Dannon Baker3.7k
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