Question: Mapped paired-end reads with Bowtie2
0
gravatar for morgan.thenoz
2.3 years ago by
morgan.thenoz0 wrote:

Hi Biostar community,

I have paired-end reads for MeDIP-seq. I'm able to mapped read1 and read2 separately on Bowtie2 using single-end reads, but i'm not able to run Bowtie2 using the paired-end option, using my 2 fils as input. Someone can help me please?

Thanks a lot

Morgan

bowtie chip-seq • 863 views
ADD COMMENTlink modified 2.3 years ago by Jennifer Hillman Jackson25k • written 2.3 years ago by morgan.thenoz0
0
gravatar for Jennifer Hillman Jackson
2.3 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Double check that the input datatype is a match what the tool is expecting. In this case, fastqsanger is the expected datatype. https://wiki.galaxyproject.org/Support#Tool_doesn.27t_recognize_dataset

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.3 years ago by Jennifer Hillman Jackson25k
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