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Question: Metagenomic analysis: taxonomic classification and gene annotation
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gravatar for Huynh Nguyen
2.7 years ago by
Huynh Nguyen • 0
Huynh Nguyen • 0 wrote:

Dear everyone, We have a shotgun metagenomic project. Now, we have a contig file in fasta format. These contigs were assembled from paired-end reads (Illumina Hiseq2500) with 700 bp of minimum length. Our project aims to analyse the classification and functional gene diversity. What should I do for next step? Thanks for your help!
galaxy • 792 views
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modified 2.7 years ago • written 2.7 years ago by Huynh Nguyen • 0
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gravatar for Jennifer Hillman Jackson
2.7 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Please see the tools in the group "Metagenomic Analysis". Documentation is on each tool's form including links to the underlying tool manuals.

I want to let you know that there are some server issues currently at http://usegalaxy.org. The suggestion is to wait until this issue is cleared before executing jobs at this server. Follow other recent Biostar posts concerning job failures for updates. For example: Problem uploading data

Related to: Organism names after Megablast?

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.7 years ago by Jennifer Hillman Jackson ♦ 25k
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gravatar for Huynh Nguyen
2.7 years ago by
Huynh Nguyen • 0
Huynh Nguyen • 0 wrote:

Thanks for your response! Regard,
ADD COMMENT • link written 2.7 years ago by Huynh Nguyen • 0
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