Question: Visualization Of Bed-Fromat Pasted Text
0
gravatar for Sridhar A Malkaram
8.0 years ago by
Sridhar A Malkaram • 30 wrote:
Hi, When loading pasted text with lines in bed format (chrom, start, end), I find that galaxy can't display it in the visualization. Does the visualization need specific bed format , with all the columns (~13)? Are gff format/Sam format files supported? With Regards, Sridhar Postdoctoral Research Associate Nutrition and Health Sciences University of Nebraska-Lincoln
gff • 763 views
ADD COMMENT • link • modified 8.0 years ago by James Taylor ♦ 470 • written 8.0 years ago by Sridhar A Malkaram • 30
0
gravatar for James Taylor
8.0 years ago by
James Taylor ♦ 470
United States
James Taylor ♦ 470 wrote:
Excerpts from Sridhar A Malkaram's message of Wed Dec 01 23:30:29 +0000 2010: What behavior are you seeing? An error or just nothing displayed? Galaxy should support 3 column bed, as well as GFF for viz. SAM must be converted to BAM for display right now.
ADD COMMENT • link written 8.0 years ago by James Taylor ♦ 470
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 178 users visited in the last hour