Question: Error In Plotting Tools For Galaxy
gravatar for Ross Hardison
12.8 years ago by
Ross Hardison270
United States
Ross Hardison270 wrote:
The histogram-plotting tool and the scatter plot tool in Galaxy now return files that looks like pdf instructions but does not display as a graph. Here is the "traceback": tion Error An unexpected error occurred in the Galaxy framework. The error has been logged. Show traceback? (for developers) NameError Python 2.4.2: /usr/bin/python2.4 Mon Feb 13 14:51:32 2006 A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred. /var/opt/universe/trunk-encode/build/bdist.cygwin-1.5.12-i686/egg/ cherrypy/ in run(self=<cherrypy._cphttptools.request object="">) /var/opt/universe/trunk-encode/build/bdist.cygwin-1.5.12-i686/egg/ cherrypy/ in main(path='/tool_runner/index') /var/opt/universe/trunk-encode/galaxy/interfaces/ in index(self=<galaxy.interfaces.tool_runner.toolrunner object="">, tool_id=None, **kwd={}) 23 # No tool id passed, redirect to main page 24 if tool_id is None: 25 return httptools.redirect( "/static/welcome.html" ) 26 # Load the tool 27 toolbox = self.get_toolbox() httptools undefined NameError: global name 'httptools' is not defined args = ("global name 'httptools' is not defined",) Ross Hardison T. Ming Chu Professor of Biochemistry and Molecular Biology The Pennsylvania State University 304 Wartik Laboratory University Park, PA 16802 e-mail: phone: 814-863-0113 FAX: 814-863-7024
galaxy • 866 views
ADD COMMENTlink modified 12.8 years ago by Istvan Albert250 • written 12.8 years ago by Ross Hardison270
gravatar for Istvan Albert
12.8 years ago by
Istvan Albert250
University Park
Istvan Albert250 wrote:
Oh now I think I know what this is, I heard of a bug in Cherrypy that makes it ignore mime-types (in this case pdf) when streaming the output back, turns everything into text/plain. We'll fix this shortly. -- Istvan Albert, Research Associate, Bioinformatics Consulting Center, Huck Institute for Life Sciences, Pennsylvania State University
ADD COMMENTlink written 12.8 years ago by Istvan Albert250
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