Question: Map With Bowtie For Illumina
0
Sonali Thakur • 30 wrote:
Hello,
We are getting below error with the Map with Bowtie for
Illumina<http: rave.cshl.edu="" galaxy="" tool_runner?tool_id="bowtie_wrappe" r="">tool.
Please suggest.
Traceback (most recent call last):
File "/var/www/galaxy/lib/galaxy/jobs/runners/local.py", line 55, in
run_job
job_wrapper.prepare()
File "/var/www/galaxy/lib/galaxy/jobs/__init__.py", line 347, in
prepare
self.command_line = self.tool.build_command_line( param_dict )
File "/var/www/galaxy/lib/galaxy/tools/__init__.py", line 1515, in
build_command_line
command_line = fill_template( self.command, context=param_dict )
File "/var/www/galaxy/lib/galaxy/util/template.py", line 9, in
fill_template
return str( Template( source=template_text, searchList=[context] )
)
File
"/var/www/galaxy/eggs/Cheetah-2.2.2-py2.6-linux-
x86_64-ucs4.egg/Cheetah/Template.py",
line 1004, in __str__
return getattr(self, mainMethName)()
File "DynamicallyCompiledCheetahTemplate.py", line 222, in respond
IndexError: list index out of range
Thanks