Question: Error on mapping: my sliced sequence (for a certain gene) gets mapped 3mb away.
gravatar for Pedro Morell
2.9 years ago by
Pedro Morell0 wrote:

I've sliced my original BAM files to my region of interest, and then transformed the sliced files into FASTQ to perform FASTQC. When I map again, both with BWA and Bowtie2, the new regios is 3 million bases away from the original region. What I'm doing wrong?

mapping bwa bowtie galaxy bam • 667 views
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