Question: Problem concatenating different lanes
gravatar for iachaim
2.9 years ago by
iachaim10 wrote:

Hi All,


I'm fairly new around here so I really appreciate all your help! I am trying to concatenate fastq files corresponding to the same samples but ran in different lanes (each end separately), so that I can proceed to trim barcodes. My problem is that I get this error when trying to concatenate. There should be plenty of space left.


Thanks so much!


The Galaxy framework encountered the following error while attempting to run the tool:

Traceback (most recent call last):
  File "/galaxy-repl/instances/main/server/lib/galaxy/jobs/runners/", line 150, in queue_job
    self.write_executable_script( ajs.job_file, script )
  File "/galaxy-repl/instances/main/server/lib/galaxy/jobs/runners/", line 316, in write_executable_script
    f.write( contents )
IOError: [Errno 28] No space left on device

Tool execution generated the following error message:

failure preparing job script
paired-end concatenate • 823 views
ADD COMMENTlink modified 2.9 years ago by Jennifer Hillman Jackson25k • written 2.9 years ago by iachaim10

Hi iachaim

This is a problem people are seeing with all sorts of tools and also loading data. You can see some other reports over on No space left on device. Unfortunately we currently have no information about what is wrong as the thread is primarily users sharing their similar problems. Still it might be worth keeping an eye on the other threads.

ADD REPLYlink written 2.9 years ago by skasowitz70
gravatar for Jennifer Hillman Jackson
2.9 years ago by
United States
Jennifer Hillman Jackson25k wrote:


This is the resolution: A: No space left on device

Thanks, Jen, Galaxy team

ADD COMMENTlink written 2.9 years ago by Jennifer Hillman Jackson25k
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