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Question: Convert form eland export format to fastq
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gravatar for luke.a.selth
3.1 years ago by
luke.a.selth • 0
Australia
luke.a.selth • 0 wrote:

Hi. Is there a method for converting from eland export format to fastq in Galaxy? I realise there is a samtools script export2sam.pl) that will do this but I am a Galaxy user through and through! (by that, I mean that my command line skills are poor)
galaxy • 983 views
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modified 3.1 years ago • written 3.1 years ago by luke.a.selth • 0
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gravatar for Jennifer Hillman Jackson
3.1 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

No tool to do this conversion has been wrapped and shared with the community through the Tool Shed that I am aware of. 

However, one could be wrapped. Or one may exist but not is not in the Tool Shed yet. Let's see if anyone else comments and if not after a few days, a feature request can be opened. 

Thanks! Jen, Galaxy team
ADD COMMENT • link written 3.1 years ago by Jennifer Hillman Jackson ♦ 25k
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gravatar for luke.a.selth
3.1 years ago by
luke.a.selth • 0
Australia
luke.a.selth • 0 wrote:

Thanks for the prompt response, Jen. I will wait and see if anyone has made a tool for this conversion.

Cheers, Luke
ADD COMMENT • link written 3.1 years ago by luke.a.selth • 0
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