Question: Very long run time in Freebayes Galaxy
gravatar for nalini1507
2.3 years ago by
nalini150710 wrote:

Hi! I am doing the course project on Coursera in Genomic Data science that requires mapping three fastq files and going ahead with the variant calling using freebayes tool. I have added the RG tags to the 3 files and given the reference genome. However when I use the freebayes tool, its running for more than 3 hours!! The file is running as I can see data when I click " view data". But the job is still running. Could you please help me. I need to submit the assignment in a few hours and I have got stuck here!! Await your suggestions asap!! Thanks.

galaxy run time freebayes • 616 views
ADD COMMENTlink modified 2.3 years ago by Jennifer Hillman Jackson23k • written 2.3 years ago by nalini150710
gravatar for Jennifer Hillman Jackson
2.3 years ago by
United States
Jennifer Hillman Jackson23k wrote:


I am not sure if the job was executing (yellow) or only in the queue waiting to execute (grey), but some jobs take longer to run than others.  The particular tool, the settings, and the inputs are all factors. This wiki explains more about how to interpret UI cues: Support#Dataset_status_and_how_jobs_execute

Best, Jen, Galaxy team

ADD COMMENTlink written 2.3 years ago by Jennifer Hillman Jackson23k
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