Question: variants intersect with dbSNP
0
gravatar for Mic
2.4 years ago by
Mic70
Australia
Mic70 wrote:

Hello,

I have a VCF file and I would like only keep variants which are in dbsnp_135.hg19.vcf. How is it possible to do it in Galaxy?

Thank you in advance

mic

dbsnp variants galaxy • 762 views
ADD COMMENTlink modified 2.4 years ago by Bjoern Gruening4.9k • written 2.4 years ago by Mic70
3
gravatar for Bjoern Gruening
2.4 years ago by
Bjoern Gruening4.9k
Germany
Bjoern Gruening4.9k wrote:

Hi,

for example can use "VCF-VCFintersect: Intersect two VCF datasets", or BEDtools to intersect both files.

Ciao,

Bjoern

ADD COMMENTlink written 2.4 years ago by Bjoern Gruening4.9k
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