Hi, how is it possible to remove new line before scaffold_3 in the below FASTA file in Galaxy:
>scaffold_1
ACTG
>scaffold_2
TGCA
>scaffold_3
ACTG
Thank you in advance,
Mic
Hi, how is it possible to remove new line before scaffold_3 in the below FASTA file in Galaxy:
>scaffold_1
ACTG
>scaffold_2
TGCA
>scaffold_3
ACTG
Thank you in advance,
Mic
Hello,
Use the "Select" tool, "Not Matching", along with the regular expression "^$" (no quotes).
More about fasta formating is in the Galaxy wiki. This particular operation covered in item 3 of the Custom Genome Troubleshooting table:
https://wiki.galaxyproject.org/Learn/CustomGenomes#Troubleshooting
Best, Jen, Galaxy team
Admin update: The wiki was migrated to the newer https://galaxyproject.org/ site. This CG help is mostly the same, with a few updates to reflect changes in Galaxy since the original post was made. The original link redirects to the help here now:
Support FAQs: https://galaxyproject.org/support/