Question: fastq with invalid ID
3.4 years ago by
markus.wolfien • 50
markus.wolfien • 50 wrote:
I recently got a new set of fastq files, and I would like to process them as usual. But they are not recognized by any tool, wheather uploaded here as fastqsanger or directly in FastQC.
Are the whitespaces within the IDs causing the problems? I tried to rename the ID's with the fastx_renamer, but there was also an error regarding the wrong file format ... here an example read.
@ISGA2X:14:FC62Y8J:3:1:2852:1031 1:N:0: ATCGGGTTTCCAGGGGAAGGCTCGTCCGCCCTGGGTTAGTCGGGACCTAAGGAGAGACCGAACGGCGTATCCGAT + E:DD:A>A=BDDDDB=BB94AB4>CEEEEB@@E835?265;6@-:685>/788(.+7-30*5(22)+*--8644;
Thanks for help!
ADD COMMENT • link •modified 3.4 years ago • written 3.4 years ago by markus.wolfien • 50