Question: cleanup datasets script python
0
gravatar for k.mamoud
3.0 years ago by
k.mamoud30
Switzerland
k.mamoud30 wrote:

Hello,

I am trying to run the script cleanup_datasets.py, but I have this error :

 

(galaxy_env)[galaxy@localhost galaxy-dist]$ python scripts/cleanup_datasets/cleanup_datasets.py ../../config/galaxy.ini -d 5  -1 -r
Traceback (most recent call last):
  File "scripts/cleanup_datasets/cleanup_datasets.py", line 524, in <module>
    if __name__ == "__main__": main()
  File "scripts/cleanup_datasets/cleanup_datasets.py", line 96, in main
    for key, value in config_parser.items( "app:main" ):
  File "/usr/lib64/python2.7/ConfigParser.py", line 642, in items
    raise NoSectionError(section)
ConfigParser.NoSectionError: No section: 'app:main'

 

 

Best regards,

 

Mohamed

 

galaxy clean dataset • 1.1k views
ADD COMMENTlink modified 3.0 years ago by Dannon Baker3.7k • written 3.0 years ago by k.mamoud30
0
gravatar for Dannon Baker
3.0 years ago by
Dannon Baker3.7k
United States
Dannon Baker3.7k wrote:

It looks like the path to your config file is incorrect -- since you're executing from the galaxy-dist folder it'd just be (without the ../../)

python scripts/cleanup_datasets/cleanup_datasets.py -d 5  -1 -r config/galaxy.ini 
ADD COMMENTlink modified 3.0 years ago • written 3.0 years ago by Dannon Baker3.7k
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