Question: location of tool after installed from toolshed
0
gravatar for arkarachai.af
3.1 years ago by
United States
arkarachai.af20 wrote:

Hi,

Do you know where I can find the actual script(python) of the tool that I installed from toolshed? The one that we can run it in command line. Sorry if this is a duplicated post, but I can't really find it.

Thanks,

Chai

directory toolshed • 744 views
ADD COMMENTlink modified 3.1 years ago by Bjoern Gruening5.1k • written 3.1 years ago by arkarachai.af20
2
gravatar for Jennifer Hillman Jackson
3.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

With a default installation, these will be at the same directory level as the "galaxy" primary build.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 3.1 years ago by Jennifer Hillman Jackson25k
2
gravatar for Bjoern Gruening
3.1 years ago by
Bjoern Gruening5.1k
Germany
Bjoern Gruening5.1k wrote:

Hi!

This location is configured in your ./config/shed_tool_conf.xml configuration file.

<toolbox tool_path="../shed_tools">

These are the Galaxy wrappers + potential script that are shipped with them. If you are searching for the binaries that are compiled during the tool installation, have a look at Jen's answer.

Hope this helps!

Bjoern

ADD COMMENTlink modified 3.1 years ago • written 3.1 years ago by Bjoern Gruening5.1k
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