Question: Error while trying go to format data for lefse (A)
0
gravatar for gmhhope
3.5 years ago by
gmhhope0
United States
gmhhope0 wrote:

Hello,

I met a problem when I tried to open format data for Lefse (A). Can anyone help to tell me how should I do with this?

http://huttenhower.sph.harvard.edu/galaxy/

Thanks.

Error Traceback:

View as:   Interactive  |  Text  |  XML (full)

⇝ IndexError: list index out of range

URL: http://huttenhower.sph.harvard.edu/galaxy/tool_runner?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fgeorge-weingart%2Flefse%2FLEfSe_for%2F1.0

Module weberror.evalexception.middleware:364 in respond          view
>>  app_iter = self.application(environ, detect_start_response)

Module paste.recursive:84 in __call__          view
>>  return self.application(environ, start_response)

Module paste.httpexceptions:633 in __call__          view
>>  return self.application(environ, start_response)

Module galaxy.web.framework.base:132 in __call__          view
>>  return self.handle_request( environ, start_response )

Module galaxy.web.framework.base:190 in handle_request          view
>>  body = method( trans, **kwargs )

Module galaxy.webapps.galaxy.controllers.tool_runner:90 in index          view
>>  template, vars = tool.handle_input( trans, params.__dict__ )

Module galaxy.tools:2116 in handle_input          view
>>  state, state_new = self.__fetch_state( trans, expanded_incoming, history,all_pages=all_pages )

Module galaxy.tools:2230 in __fetch_state          view
>>  state = self.new_state( trans, history=history, all_pages=all_pages )

Module galaxy.tools:2015 in new_state          view
>>  self.fill_in_new_state( trans, inputs, state.inputs, history=history )

Module galaxy.tools:2024 in fill_in_new_state          view
>>  state[ input.name ] = input.get_initial_value( trans, context, history=history )

Module galaxy.tools.parameters.grouping:535 in get_initial_value          view
>>  rval[ child_input.name ] = child_input.get_initial_value( trans, child_context,history=history )

Module galaxy.tools.parameters.basic:943 in get_initial_value          view
>>  options = list( self.get_options( trans, context ) )

 

lefse software error galaxy • 1.1k views
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